Publications

Journals

  • M. Konzack, T. McKetterick, T. Ophelders, M. Buchin, L. Giuggioli, J. Long, T. Nelson, M. A. Westenberg, and K. Buchin. Visual analytics of delays and interaction in movement data. International Journal of Geographical Information Science, 31(2):320-345, 2017.
  • K. Dinkla, N. Henry Riche, and M. A. Westenberg. Dual adjacency matrix: Exploring link groups in dense networks. Computer Graphics Forum 34(3):311–320, 2015.
  • S. P. A. Alewijnse, T. M. Bagautdinov, M. T. de Berg, Q. W. Bouts, A. P. ten Brink, K. Buchin, and M. A. Westenberg. Progressive geometric algorithms. Journal of Computational Geometry 6(2):72–92, 2015.
  • A. C. Jalba, M. A. Westenberg, and J. B. T. M. Roerdink. Interactive segmentation and visualization of DTI data using a hierarchical watershed representation. IEEE Trans. Image Processing 24(3):1025–1035, 2015.
  • K. Dinkla, M. El-Kebir, C.-I. Bucur, M. Siderius, M.J. Smit, M.A. Westenberg, and G.W. Klau. eXamine: Exploring annotated modules in networks. BMC Bioinformatics 15:201, 2014.
  • K. Dinkla, M. A. Westenberg and J. J. van Wijk. Compressed adjacency matrices: untangling gene regulatory networks. IEEE Trans. Visualization and Computer Graphics 18(12):2457-2466, 2012.
  • K. Dinkla and M. A. Westenberg. Network visualization in cell biology. Tsinghua Science and Technology 17(4):365-382, 2012.
  • K. Dinkla, M. van Kreveld, B. Speckmann, M. A. Westenberg. Kelp diagrams: point set membership visualization. Computer Graphics Forum 31(3):875-884, 2012.
  • K. Dinkla, M. A. Westenberg, H. Timmerman, S.A.F.T. van Hijum, J.J. van Wijk. Comparison of multiple weighted hierarchies: visual analytics for microbe community profiling. Computer Graphics Forum 30(3):1141-1150, 2011.
  • M. A. Westenberg, J. B. T. M. Roerdink, O. P. Kuipers, S. A. F. T. van Hijum. SpotXplore: a Cytoscape plugin for visual exploration of hotspot expression in gene regulatory networks. Bioinformatics 26(22):2922-2923, 2010.
  • M. A. Westenberg, S. A. F. T. van Hijum, O. P. Kuipers, J. B. T. M. Roerdink. Visualizing Genome Expression and Regulatory Network Dynamics in Genomic and Metabolic Context. Computer Graphics Forum, 27(3):887-894, 2008. [pdf]
  • M. A. Westenberg, J. B. T. M. Roerdink, M. H. F. Wilkinson. Volumetric attribute filtering and interactive visualization using the Max-Tree representation. IEEE Transactions on Image Processing, 16(12):2943-2952, 2007. [pdf]
  • C. Grigorescu, N. Petkov, M. A. Westenberg. Contour and boundary detection improved by surround suppression of texture edges. Image and Vision Computing, 22(8):609-622, 2004. [pdf]
  • C. Grigorescu, N. Petkov, and M. A. Westenberg. Contour Detection Based on Non-Classical Receptive Field Inhibition. IEEE Trans. Image Processing, 12(7):729-739, 2003. [pdf]
  • N. Petkov and M. A. Westenberg. Suppression of contour perception by band-limited noise and its relation to non-classical receptive field inhibition. Biological Cybernetics, 88:236-246, 2003. [pdf]
  • M. A. Westenberg and J. B. T. M. Roerdink. An extension of Fourier-wavelet volume rendering by view interpolation. Journal of Mathematical Imaging and Vision, 14(2):103-115, 2001. [pdf]
  • M. A. Westenberg and J. B. T. M. Roerdink. Frequency Domain Volume Rendering by the Wavelet X-Ray Transform. IEEE Transactions on Image Processing, 9(7):1249-1261, 2000. [pdf]
  • M. A. Westenberg and J. B. T. M. Roerdink. X-Ray Volume Rendering through Two-Stage Splatting. Machine Graphics and Vision, 9(1/2):307-314, 2000. [pdf]
  • J. B. T. M. Roerdink and M. A. Westenberg. Wavelet-Based Volume Visualization. Nieuw Archief voor Wiskunde, 17(2):149-158, 1999. [pdf]
  • J. B. T. M. Roerdink and M. A. Westenberg. Data-parallel tomographic reconstruction: A comparison of filtered backprojection and direct Fourier reconstruction. Parallel Computing, 24:2129-2142, 1998. [pdf]

Conferences

  • T. Castermans, B. Speckmann, K. Verbeek, M. A. Westenberg, A. Betti, and H. van den Berg. GlamMap: geovisualization for e-humanities. In Proc. 2016 Workshop on Visualization for the Digital Humanities, 2016.
  • A. Corvò, M. A. Westenberg, M. A. van Driel, and J. J. van Wijk. PATHONE: From one thousand patients to one cell. In Proc. 6th Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM 2016), 2016.
  • M. Konzack, T. McKetterick, G. Wilcox, M. Buchin, L. Giuggioli, J. Gudmundsson, M. A. Westenberg, and K. Buchin. Analyzing delays in trajectories. In Proc. 8th IEEE Pacific Visualization Symposium (PacificVis 2015), pages 93–97 IEEE, 2015.
  • S. P. A. Alewijnse, K. Buchin, M. Buchin, A. Kölschz, H. Kruckenberg, and M. A. Westenberg. A framework for trajectory segmentation by stable criteria. In 22nd ACM SIGSPATIAL Int. Conf. Advances in Geographic Information Systems, pages 351–360, 2014.
  • S.P.A Alewijnse, T.M. Bagautdinov, M.T. de Berg, Q.W. Bouts, A.P. ten Brink, K. Buchin, and M.A. Westenberg. Progressive geometric algorithms. In Proc. 30th ACM Symposium on Computational Geometry (SoCG), Kyoto, Japan, June 8-11, pp. 50-59, 2014.
  • Brakel, R.B.J. van, Fiers, M.W.E.J., Francke, C., Westenberg, M.A. & Wetering, H.M.M. van de (2013). COMBat : visualizing co-occurrence of annotation terms. In J. Roerdink & J. Kennedy (Eds.), Conference Paper : 2013 IEEE Symposium on Biological Data Visualization (BioVis, Atlanta GA, USA, October 13-14, 2013), (pp. 17-24). IEEE.
  • Gruarin, A., Westenberg, M.A. & Barakova, E.I. (2013). StepByStep : design of an interactive pictorial activity game for teaching generalization skills to children with autism. In J.C. Anacleto, E.W.G. Clua, F.S. Correa da Silva, S. Fels & H.S. Yang (Eds.), Conference Paper : Entertainment Computing – ICEC 2013 : 12th International Conference, ICEC 2013, São Paulo, Brazil, October 16-18, 2013. Proceedings, (Lecture Notes in Computer Science, 8215, pp. 87-92). Berlin: Springer.
  • A.C. Jalba, M.A. Westenberg. A comparison of two tree representations for data-driven volumetric image filtering. In proc. Int. Symposium on Mathematical Morphology (ISMM 2011), volume LNCS 6671 of Lecture Notes in Computer Science, pp. 405-416, 2011.
  • A. C. Jalba, M. A. Westenberg, M. H. M. Grooten. Size from specular highlights for analyzing droplet size distributions. In X. Jiang, N. Petkov, editors, Computer Analysis of Images and Patterns - CAIP 2009, volume LNCS 5702 of Lecture Notes in Computer Science, pp. 1188-1195, Springer, 2009. [pdf]
  • R. Bourqui, M. A. Westenberg. Visualizing Temporal Dynamics at the Genomic and Metabolic Level. In 13th Int. Conf. Information Visualization 2009, pp.317-322, 15-17 July 2009. [pdf]
  • M. A. Westenberg, S. A. F. T. van Hijum, A. T. Lulko, O. P. Kuipers, and J. B. T. M. Roerdink. Interactive visualization of gene regulatory networks with associated gene expression time series data. In L. Linsen, H. Hagen, and B. Hamann, editors, Visualization in Medicine and Life Sciences, Visualization and Mathematics. Springer Verlag, Berlin, Germany, pages 293-312, 2007. [pdf]
  • M. A. Westenberg and T. Ertl. Wavelet-based representation of uniform multi-component data. In Vision, Modeling, and Visualization 2005, G. Greiner, J. Hornegger, H. Niemann, M. Stamminger, Eds., pages 351-358, Erlangen, Germany, November 16-18, 2005. [pdf]
  • M. A. Westenberg and T. Ertl. Denoising 2-D Vector Fields by Vector Wavelet Thresholding. Journal of WSCG 13(1):33-40, 2005. [pdf]
  • M. A. Westenberg and T. Ertl. Vector wavelet thresholding for vector field denoising. IEEE Visualization 2004 Posters Compendium, pp. 123-124, 2004. [pdf]
  • C. Grigorescu, N. Petkov, and M. A. Westenberg. Contour detection operators based on surround inhibition. In IEEE Int. Conf. Image Processing, volume III, pages 437-440, Barcelona, Spain, September 14-17, 2003. [pdf]
  • M. H. F. Wilkinson, T. Wijbenga, G. de Vries, and M. A. Westenberg. Blood vessel segmentation using moving-window robust automatic threshold selection. In IEEE Int. Conf. Image Processing, volume II, pages 1093-1096, Barcelona, Spain, September 14-17, 2003. [pdf]
  • C. Grigorescu, N. Petkov, and M. A. Westenberg. The role of non-CRF inhibition in contour detection. Journal of WSCG, 11(2):197-204, 2003. [pdf]
  • C. Grigorescu, N. Petkov, and M. A. Westenberg. Performance enhancement of contour detectors by surround inhibition. In K. Wojciechowski, editor, International Conference on Computer Vision and Graphics, pages 313-318, Zakopane, Poland, September 25-29, 2002. [pdf]
  • C. Grigorescu, N. Petkov, and M. A. Westenberg. Improved contour detection by non-classical receptive field inhibition. In H. H. Bülthoff, S.-W. Lee, T. A. Poggio, and C. Wallraven, editors, Biologically Motivated Computer Vision - BMCV 2002 , volume LNCS 2525 of Lecture Notes in Computer Science, pages 50-59, Springer, 2002. [pdf]
  • A. Meijster, M. A. Westenberg, and M. H. F. Wilkinson. Interactive shape preserving filtering and visualization of volumetric data. Fifth IASTED Conf Comp. Graphics Imaging, CGIM 2002, August 12-14, 2002, Kauai, Hawaii, USA, pp 640-643. [pdf]
  • M. H. F. Wilkinson and M. A. Westenberg. Shape preserving filament enhancement filtering. In W. J. Niessen and M. A. Viergever, editors, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2001, volume LNCS 2208 of Lecture Notes in Computer Science, pages 770-777, Springer, 2001. [pdf]
  • M. A. Westenberg and J. B. T. M. Roerdink. X-Ray Volume Rendering by Hierarchical Wavelet Splatting. In Proceedings of the 15th International Conference on Pattern Recognition, pages 163-166, Barcelona, Spain, September 2000. [pdf]
  • M. A. Westenberg and J. B. T. M. Roerdink. Parallelisation of Tomographic Reconstruction Methods. In Proceedings of the fourth Groningen International Information Technology Conference for Students. University of Groningen, February 1997.

Books and book chapters

  • J.J. van Wijk, T. Isenberg, J.B.T.M. Roerdink, A.C. Telea, M.A. Westenberg. Evaluation. In Mastering The Information Age: Solving Problems with Visual Analytics, pages 131-143. Eurographics Association, 2010.
  • N. Petkov and M. A. Westenberg, editors. Proc. 10th Int. Conf. Computer Analysis of Images and Patterns, volume 2756 of Lecture Notes in Computer Science. Springer Verlag, 2003.
  • M.A. Westenberg and J.B.T.M. Roerdink. Mixed-method identifications. In: Automatic Diatom Identification (H. du Buf and M. Bayer, eds.), Chapter 12, pp 245-257, World Scientific Publishing, Singapore, 2002.
  • M. A. Westenberg. Wavelet-based X-ray volume rendering. PhD thesis, Institute for Mathematics and Computing Science, University of Groningen, The Netherlands, 2001.

Other

  • M. A. Westenberg, S. A. F. T. van Hijum, O. P. Kuipers, and J. B. T. M. Roerdink. Visualizing Genome Expression and Regulatory Network Dynamics in Genomic and Metabolic Context. Benelux Bioinformatics Conference (BBC 2008), Maastricht, The Netherlands, December 15-16, 2008 (poster).
  • M. A. Westenberg. Visualisatie in de bioinformatica. In: watisgenomics.nl - public information about genomics research, technology and societal aspects, 2007. [web page]
  • M. A. Westenberg, S. A. F. T. van Hijum, A. T. Lulko, O. P. Kuipers, and J. B. T. M. Roerdink. Interactive visualization of gene regulatory networks. NBIC-ISNB 2007, Amsterdam, April 16-19, 2007 (poster).
  • M. A. Westenberg, S. A. F. T. van Hijum, A. T. Lulko, O. P. Kuipers, and J. B. T. M. Roerdink. GENeVis: Interactive Visualization of Gene Regulatory Networks. Benelux Bioinformatics Conference (BBC 2007), Leuven, Belgium, November 12-13, 2007 (poster).
  • M. A. Westenberg, J. B. T. M. Roerdink, S. A. F. T. van Hijum, A. T. Lulko, O. P. Kuipers, GENeVis: Interactive Visualization of Gene Regulatory Networks, SIREN: Scientific ICT Research Event Netherlands, 30 October 2007, TU Delft (poster).
  • M. A. Westenberg, S. A. F. T. van Hijum, O. P. Kuipers, and J. B. T. M. Roerdink. Gene expression and network visualization. Netherlands Bioinformatics Conference, Ede-Wageningen, April 24, 2006 (poster).
  • M. A. Westenberg, S. A. F. T. van Hijum, O. P. Kuipers, and J. B. T. M. Roerdink. GENeVis: Gene expression and network visualization. 3rd Int. Symposium on Networks in Bioinformatics - ISNB 2006, Amsterdam, May 29-31, 2006 (poster).
  • N. Petkov and M. A. Westenberg. Non-classical receptive field inhibition and its relation to orientation-contrast pop-out and line and contour saliency: a computational approach. Perception, 33(suppl.):68b, 2004.
  • N. Petkov and M. A. Westenberg. Band-limited noise suppresses contour perception not only of letters but of any objects. Perception, 33(suppl.):150b, 2004.
  • N. Petkov, M. A. Westenberg, and C. Grigorescu. Non-classical receptive field inhibition and contour detection. Perception, 32(suppl.):1-2, 2003.
  • M. A. Westenberg. Parallelisation of Tomographic Reconstruction Methods. Master's Thesis, University of Groningen, November 1996.