DNAVis
,
a tool for visualizing annotated DNA sequences, completed during a master project.
See, the resulting paper for more details.
In this project we take DNAVis a step further by integrating more biological data.
At KEGG lots of biological data
is available. In particular we are interested in integrating so-called metabolic pathways with the annotated DNA
view of DNAVis. Visually presenting vast amount of data
and supplying the required interaction possibilities will be the main problems to handle. PRI will, apart from domain knowledge,
supply sample data for testing the results.
Supervisors: Huub van de Wetering and Mark Fiers (PRI). |
Biojava is a java package with lots of functionality
for handling biological datasets. During this internship the suitability of biojava for implementing a tool a la DNAVis is to be evaluated. Biojava is expected to significantly reduce the effort to handle biological data.
Jogl is a java implementation of the Opengl standard. If all works out, the result of this internship is a hopefully fully working clone of Supervisor: Huub van de Wetering. |