Fixed a bug in the Decomposed Replayer

As a result of the bug, a model move could be seen as a log move, which caused the merge of the subalignments to block.

As a result of the bug fix, the option to prefer synchronous moves on the border transitions has been reinstated. Earlier on, this option resulted in these blocking merges, quite possibly because of the bug that has now been fixed.

Many thanks to Jonathan Lee for noticing the bug.

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